Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs11253488 chr10:922482 G/C 1.96E-6 503 22.22 23.85 14.5 KM Plot
LGG rs11253492 chr10:936873 T/C 5.0E-7 508 21.85 24.23 14.43 KM Plot
LGG rs11253493 chr10:936931 T/C 5.0E-7 508 21.85 24.23 14.43 KM Plot
LGG rs11253494 chr10:937047 C/T 4.17E-7 509 21.77 24.23 14.47 KM Plot
LGG rs11253495 chr10:937064 C/T 5.37E-7 506 21.85 24.23 14.43 KM Plot
LGG rs11253499 chr10:944090 A/C 3.37E-7 506 21.77 24.23 14.43 KM Plot
LGG rs11253509 chr10:964306 C/T 9.97E-5 506 23.53 22.55 14.65 KM Plot
LGG rs11253517 chr10:970524 A/G 1.26E-5 509 14.8 21.63 23.58 KM Plot
LGG rs11253520 chr10:975961 C/G 5.83E-6 509 14.73 21.27 24.73 KM Plot
LGG rs11253521 chr10:976416 G/C 8.17E-5 506 23.53 22.55 14.5 KM Plot
LGG rs11257323 chr10:11817045 A/C 8.01E-6 509 14.6 21.28 24.37 KM Plot
LGG rs112578729 chr14:102171381 C/G 5.44E-13 505 21.7 27.9 5.4 KM Plot
LGG rs112584416 chr5:169046953 G/C 1.64E-8 506 21.85 24.07 6.83 KM Plot
LGG rs112608884 chr14:24414795 A/G 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs112702671 chr5:180220930 C/T 1.32E-5 499 23.73 18.15 8.07 KM Plot